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@OHDSI Observational Health Data Sciences and Informatics

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    318 repositories

    • CohortConstructor

      Public
      R
      •
      Apache License 2.0
      •0•1•40•3•Updated Jan 26, 2025Jan 26, 2025

    • dbt-synthea

      Public
      [Under development] A dbt ETL project to convert a Synthea synthetic data set into the OMOP CDM
      Python
      •
      Apache License 2.0
      •8•20•20•2•Updated Jan 25, 2025Jan 25, 2025

    • ETL-LambdaBuilder

      Public
      CDM Builder leveraging AWS Lambda
      C#
      •
      Apache License 2.0
      •15•15•0•1•Updated Jan 25, 2025Jan 25, 2025

    • WhiteRabbit

      Public
      WhiteRabbit is a small application that can be used to analyse the structure and contents of a database as preparation for designing an ETL. It comes with RabbitInAHat, an application for interactive design of an ETL to the OMOP Common Data Model with the help of the the scan report generated by White Rabbit.
      Java
      •
      Apache License 2.0
      •91•184•107•5•Updated Jan 25, 2025Jan 25, 2025

    • Strategus

      Public
      An R package for coordinating and executing analytics using HADES modules
      R
      •11•6•16•5•Updated Jan 24, 2025Jan 24, 2025

    • ClinicalCharacteristics

      Public
      [under development] table shell approach to OMOP characterization
      R
      •
      Apache License 2.0
      •1•0•11•0•Updated Jan 24, 2025Jan 24, 2025

    • OmopSketch

      Public
      R
      •
      Apache License 2.0
      •0•1•7•1•Updated Jan 24, 2025Jan 24, 2025

    • DeepPatientLevelPrediction

      Public
      An R package for performing patient level prediction using deep learning in an observational database in the OMOP Common Data Model.
      hadesdeep-learning
      R
      •4•12•23•2•Updated Jan 24, 2025Jan 24, 2025

    • CommunityDashboard

      Public
      Dashboard to monitor the health of the OHDSI community. A Flask app of Dash Dashboards for tracking public API's
      TypeScript
      •
      Apache License 2.0
      •1•6•11•0•Updated Jan 24, 2025Jan 24, 2025

    • PatientLevelPrediction

      Public
      An R package for performing patient level prediction in an observational database in the OMOP Common Data Model.
      hades
      HTML
      •90•189•30•3•Updated Jan 24, 2025Jan 24, 2025

    • WebAPI

      Public
      OHDSI WebAPI contains all OHDSI services that can be called from OHDSI applications
      Java
      •
      Apache License 2.0
      •168•134•130•25•Updated Jan 24, 2025Jan 24, 2025

    • Atlas

      Public
      ATLAS is an open source software tool for researchers to conduct scientific analyses on standardized observational data
      JavaScript
      •
      Apache License 2.0
      •139•277•213•20•Updated Jan 24, 2025Jan 24, 2025

    • Vocabulary-v5.0

      Public
      Build process for the OHDSI Standardized Vocabularies. Currently not available as independent release.
      PLpgSQL
      •
      The Unlicense
      •75•229•222•12•Updated Jan 24, 2025Jan 24, 2025

    • circe-be

      Public
      CIRCE is a cohort definition and syntax compiler tool for OMOP CDMv5
      cohort-definitions
      Java
      •
      Apache License 2.0
      •13•9•7•7•Updated Jan 24, 2025Jan 24, 2025

    • Achilles

      Public
      Automated Characterization of Health Information at Large-scale Longitudinal Evidence Systems (ACHILLES) - descriptive statistics about a OMOP CDM database
      R
      •124•133•48•4•Updated Jan 23, 2025Jan 23, 2025

    • PhenotypeR

      Public
      R
      •
      Apache License 2.0
      •0•2•28•0•Updated Jan 23, 2025Jan 23, 2025

    • CureIdRegistry

      Public
      TSQL
      •9•14•3•3•Updated Jan 23, 2025Jan 23, 2025

    • EvidenceNetwork

      Public
      Apache License 2.0
      •0•0•7•0•Updated Jan 23, 2025Jan 23, 2025

    • Ares

      Public
      A Research Exploration System
      Vue
      •
      Apache License 2.0
      •7•12•35•3•Updated Jan 23, 2025Jan 23, 2025

    • Arachne

      Public
      Arachne Data Node web application
      TypeScript
      •
      Apache License 2.0
      •1•1•11•1•Updated Jan 23, 2025Jan 23, 2025

    • omock

      Public
      R
      •
      Apache License 2.0
      •1•2•4•0•Updated Jan 23, 2025Jan 23, 2025

    • Characterization

      Public
      Various types of characterizations of a target and outcome cohort.
      R
      •5•3•5•4•Updated Jan 22, 2025Jan 22, 2025

    • MethodEvaluation

      Public
      An R package for the evaluation of estimation methods
      hades
      R
      •6•8•3•0•Updated Jan 22, 2025Jan 22, 2025

    • DatabaseConnector

      Public
      An R package for connecting to databases using JDBC.
      hades
      R
      •84•55•32•2•Updated Jan 22, 2025Jan 22, 2025

    • context

      Public
      A python library to create knowledge graphs for context-aware prediction modeling and more.
      Python
      •0•0•0•0•Updated Jan 21, 2025Jan 21, 2025

    • ArachneExecutionEngine

      Public
      Arachne Execution Engine is a component used to execute remote SQL or R code. It is used by both Arachne Data Node as well as WebAPI
      PLpgSQL
      •8•8•1•1•Updated Jan 21, 2025Jan 21, 2025

    • bayes-bridge

      Public
      Bayesian sparse regression with regularized shrinkage and conjugate gradient acceleration
      Jupyter Notebook
      •7•19•5•0•Updated Jan 19, 2025Jan 19, 2025

    • drat

      Public
      drat repository for OHDSI R packages
      7•5•0•0•Updated Jan 16, 2025Jan 16, 2025

    • Bouzyges

      Public
      Python
      •
      GNU General Public License v3.0
      •1•4•0•0•Updated Jan 15, 2025Jan 15, 2025

    • Andromeda

      Public
      AsynchroNous Disk-based Representation of MassivE DAta: An R package aimed at replacing ff for storing large data objects.
      hades
      R
      •13•11•18•0•Updated Jan 15, 2025Jan 15, 2025