0.2.2

What's Changed

• Rna seq alignment [email protected] by @lindaxiang in #38
  • Update [email protected] --> 2.9.0
  • Update [email protected] --> 2.9.3
  • Update song/score URLs
  • Update example JSONs

Full Changelog: 0.2.1...0.2.2

rna-seq-alignment-wf.v0.2.2

• Release rna-seq-alignment-wf.v0.2.2 (1cb9c75)
• Package rna-seq-alignment-wf.v0.2.2.tar.gz (sha256: ad3bec829a3bbae603ccd7ecb7f68833aeedc7ebd4a56b6b21fc071fd6f5f640)
• Package URI github.com/icgc-argo-workflows/rna-seq-alignment/[email protected]
• Run the package: nextflow run icgc-argo-workflows/rna-seq-alignment/rna-seq-alignment-wf/main.nf -r rna-seq-alignment-wf.v0.2.2 -params-file <params-json-file>

0.2.1

What's Changed

• Update to use [email protected] and [email protected] with song/score containers switching to ghcr.io and latest versions (score-client: 5.8.1 & song-client: 5.0.2)

rna-seq-alignment-wf.v0.2.1

• Release rna-seq-alignment-wf.v0.2.1 (536f684)
• Package rna-seq-alignment-wf.v0.2.1.tar.gz (sha256: ffd4d78dc2183757ffbf77ab2ef1aa4fb86069d5c7067811a43ade029f440259)

0.2.0

What's Changed

• Add option aln_qc
• Add step to generate payload for transcriptome bam from STAR
• Update to use genome alignment [email protected] with addition of transcriptome output for STAR
• Update to use [email protected] with addition of payload generation for transcriptome bam

Full Changelog: 0.1.1...0.2.0

rna-seq-alignment-wf.v0.2.0

• Release rna-seq-alignment-wf.v0.2.0 (82ebc92)
• Package rna-seq-alignment-wf.v0.2.0.tar.gz (sha256: e538f85b08d88eaaa7091a32f1bf9f9704d1b9d978378d58ee90ae7f9ae486f3)

genome-alignment-star.v0.2.6

• Release genome-alignment-star.v0.2.6 (951fc69)
• Package genome-alignment-star.v0.2.6.tar.gz (sha256: 670517be9b20ea1fdf783228a9a49dcaad2dd015f16a4396d59965692dff3954)

0.1.1

What's Changed

• Genome Build: GRCh38_Verily_v1
• Genome Annotation: GENCODE v40
• Use [email protected]
• Use [email protected]
• Use [email protected]
• Use [email protected]
• Use [email protected]
• Use [email protected]

rna-seq-alignment-wf.v0.1.1

• Release rna-seq-alignment-wf.v0.1.1 (9a0ba63)
• Package rna-seq-alignment-wf.v0.1.1.tar.gz (sha256: 198b276c3390f548b309891a5a9f926a0f55761025498b5b2256f800f0182da3)

genome-alignment-star.v0.2.5

• Release genome-alignment-star.v0.2.5 (816439b)
• Package genome-alignment-star.v0.2.5.tar.gz (sha256: 0dac39cc4690f568f7cd27bf7b519f758d7a0bc6133b96101f76e79365801b87)