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software.hpc: Tracking PR #1

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spack-user@peloton and others added 30 commits June 23, 2023 12:09
[farm] reorg packages.yaml
24f2a14
[peloton] initital configurations.
4ae0037
[peloton] core environment.
1e015e7
[peloton] compilers from core environment.
baf7283
WIP main
8c3b48f
Split hpccf repo into version-pinned repos'
24e13f7
Add v0.20 which removes many backported packages
339444d
@camillescottatwork
Peloton v0.20 production config.
bda0c15
@camillescottatwork
Peloton modulefiles post upgrade
93d3e7f
@camillescottatwork
[peloton] v0.20 packages post peloton upgrade
4a3f58a
@camillescottatwork
Template for external gcc
fcb09f6
@camillescottatwork
[peloton] main env, post upgrade.
013dc60
[peloton] update modulefiles
30503e0
Update gcc 7.5.0 compiler paths
90145ab
Get working bwa-mem2 package.
d1621b2
add dashing package
023cc11
bwa-mem2 patches.
1e35875
idl package
031aea1
coverm package
40f2f54
[peloton] many package updates in main environment.
4941aeb
[peloton] reconcretized main lockfile
b094f09
[peloton] remove unused core envuironment
530ebf7
@camillescottatwork
remove duplicates.txt
8d3ea32
@camillescottatwork
[peloton] add numactl to main environment.
3c8df35
@camillescottatwork
Simple environment for EPYC CPU benchmarking.
7bda7b7
@camillescottatwork
[peloton] add aocc to spack compiler configuration
b1965a8
@camillescottatwork
Edits to stream package.
7e14c0e
@camillescottatwork
[peloton] new modulefile
810828b
@camillescottatwork
[peloton] update for slurm patch
00a8382
@OmenWild
Bump the Slurm stack to use PMIx 4.2.6 + newer ucx and hwloc.
f571f93
Software User added 30 commits December 18, 2024 17:49
Fork slurm for new version; for jdk for new version; implement mlxup …
c831692 
…package
Merge builtin changes for environment-modules
90277e8
Merge changes from builtin for genemark-et
d360e5f
[config:core] move source_cache to /dev/shm
c179ecc
Update core compilers, libs; bump to gcc 13.2
6d8aa01
[main] additional packages, fixed packages for main
918fb4a
reconcretize core
e8e6dc4
reconcretize main
ee775b1
[package] megahit 1.29
99349f5
[package] fork py-multiqc for dep fixes
7fd329f
[package] slurm: pmix dep
4859fb5
[package] rstudio: -DCMAKE_INSTALL_RPATH_USE_LINK_PATH=True to fix RP…
f2216ea 
…ATH problem on cmake install
[env:main] package version bumps
bdf383a
[env:core] add openmpi 4.1.5
3a4b94d
[concretize] core
fd3975b
[concretize] main
48c6ca8
software.hpc modulefiles
4436a08
[modulefiles] openmpi 4.1.5
3b24c1c
Update to the newest git hash available on github.
35d23c9 
Reformatting.
Install the newest hash of ngstoos from github. Build with an older
2cf9059 
compiler as 13.2.0 errored.
Fix mpi concretization problems by removing mpi:require:any_of clause
6c07383
[modulefiles] regenerate
823b04f
[package] gromacs: fork to add a patch to nvcc arguments in gromacs 2022
6f04f28
Switch to symlinking views
aa54111
[env:main] symlink view
06e423e
[env:main] gromacs 2022.3
a6e7b1a
[env:main] reconcretize
8bf81a0
[modulefiles] regenerate
96f7083
[package] slurm: remove pmix version req
e2c4995
[env:main,package] rstudio: add a template with OOD information
a41e0be
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3 participants
@camillescottatwork @OmenWild @camillescott