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RFC for histogram CPU backend implementation (#1930)
Proposal for CPU backend implementation for histogram.
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rfcs/proposed/algorithms_histogram_cpu_backends/README.md
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# Host Backends Support for the Histogram APIs | ||
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## Introduction | ||
The oneDPL library added histogram APIs, currently implemented only for device policies with the DPC++ backend. These | ||
APIs are defined in the oneAPI Specification 1.4. Please see the | ||
[oneAPI Specification](https://github.com/uxlfoundation/oneAPI-spec/blob/main/source/elements/oneDPL/source/parallel_api/algorithms.rst#parallel-algorithms) | ||
for details. The host-side backends (serial, TBB, OpenMP) are not yet supported. This RFC proposes extending histogram | ||
support to these backends. | ||
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The pull request for the proposed implementation exists [here](https://github.com/oneapi-src/oneDPL/pull/1974). | ||
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## Motivations | ||
There are many cases to use a host-side serial or a host-side implementation of histogram. Another motivation for adding | ||
the support is simply to be spec compliant with the oneAPI specification. | ||
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## Design Considerations | ||
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### Key Requirements | ||
Provide support for the `histogram` APIs with the following policies and backends: | ||
- Policies: `seq`, `unseq`, `par`, `par_unseq` | ||
- Backends: `serial`, `tbb`, `openmp` | ||
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Users have a choice of execution policies when calling oneDPL APIs. They also have a number of options of backends which | ||
they can select from when using oneDPL. It is important that all combinations of these options have support for the | ||
`histogram` APIs. | ||
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### Performance | ||
Histogram algorithms typically involve minimal computation and are likely to be memory-bound. So, the implementation prioritizes | ||
reducing memory accesses and minimizing temporary memory traffic. | ||
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For CPU backends, we will focus on input sizes ranging from 32K to 4M elements and 32 - 4k histogram bins. Smaller sizes | ||
of input may best be suited for serial histogram implementation, and very large sizes may be better suited for GPU | ||
device targets. Histogram bin counts can vary from use case to use case, but the most common rule of thumb is to size | ||
the number of bins approximately to the cube root of the number of input elements. For our input size ranges this gives | ||
us a range of 32 - 256. In practice, some users find need to increase the number of bins beyond that rough rule. | ||
For this reason, we have aelected our histogram size range to 32 - 4k elements. | ||
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### Memory Footprint | ||
There are no guidelines here from the standard library as this is an extension API. Still, we will minimize memory | ||
footprint where possible. | ||
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### Code Reuse | ||
We want to minimize adding requirements for parallel backends to implement, and lift as much as possible to the | ||
algorithm implementation level. We should be able to avoid adding a `__parallel_histogram` call in the individual | ||
backends, and instead rely upon `__parallel_for`. | ||
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### SIMD/openMP SIMD Implementation | ||
Currently oneDPL relies upon openMP SIMD to provide its vectorization, which is designed to provide vectorization across | ||
loop iterations, oneDPL does not directly use any intrinsics. | ||
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There are a few parts of the histogram algorithm to consider. For the calculation to determine which bin to increment | ||
there are two APIs, even and custom range which have significantly different methods to determine the bin to increment. | ||
For the even bin API, the calculations to determine selected bin have some opportunity for vectorization as each input | ||
has the same mathematical operations applied to each. However, for the custom range API, each input element uses a | ||
binary search through a list of bin boundaries to determine the selected bin. This operation will have a different | ||
length and control flow based upon each input element and will be very difficult to vectorize. | ||
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Next, let's consider the increment operation itself. This operation increments a data dependent bin location, and may | ||
result in conflicts between elements of the same vector. This increment operation therefore is unvectorizable without | ||
more complex handling. Some hardware does implement SIMD conflict detection via specific intrinsics, but this is not | ||
available via OpenMP SIMD. Alternatively, we can multiply our number of temporary histogram copies by a factor of the | ||
vector width, but it is unclear if it is worth the overhead. OpenMP SIMD provides an `ordered` structured block which | ||
we can use to exempt the increment from SIMD operations as well. However, this often results in vectorization being | ||
refused by the compiler. Initial implementation will avoid vectorization of this main histogram loop. | ||
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Last, for our below proposed implementation there is the task of combining temporary histogram data into the global | ||
output histogram. This is directly vectorizable via our existing brick_walk implementation, and will be vectorized when | ||
a vector policy is used. | ||
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### Serial Backend | ||
We plan to support a serial backend for histogram APIs in addition to openMP and TBB. This backend will handle all | ||
policies types, but always provide a serial unvectorized implementation. To make this backend compatible with the other | ||
approaches, we will use a single temporary histogram copy, which then is copied to the final global histogram. In our | ||
benchmarking, using a temporary copy performs similarly as compared to initializing and then accumulating directly into | ||
the output global histogram. There seems to be no performance motivated reason to special case the serial algorithm to | ||
use the global histogram directly. | ||
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## Existing APIs / Patterns | ||
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### count_if | ||
`histogram` is similar to `count_if` in that it conditionally increments a number of counters based upon the data in a | ||
sequence. `count_if` relies upon the `transform_reduce` pattern internally, and returns a scalar-typed value and doesn't | ||
provide any function to modify the variable being incremented. Using `count_if` without significant modification would | ||
require us to loop through the entire sequence for each output bin in the histogram. From a memory bandwidth | ||
perspective, this is untenable. Similarly, using a `histogram` pattern to implement `count_if` is unlikely to provide a | ||
well-performing result in the end, as contention should be far higher, and `transform_reduce` is a very well-matched | ||
pattern performance-wise. | ||
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### parallel_for | ||
`parallel_for` is an interesting pattern in that it is very generic and embarrassingly parallel. This is close to what | ||
we need for `histogram`. However, we cannot simply use it without any added infrastructure. If we were to just use | ||
`parallel_for` alone, there would be a race condition between threads when incrementing the values in the output | ||
histogram. We should be able to use `parallel_for` as a building block for our implementation, but it requires some way | ||
to synchronize and accumulate between threads. | ||
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## Alternative Approaches | ||
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### Atomics | ||
This method uses atomic operations to remove the race conditions during accumulation. With atomic increments of the | ||
output histogram data, we can merely run a `parallel_for` pattern. | ||
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To deal with atomics appropriately, we have some limitations. We must either use standard library atomics, atomics | ||
specific to a backend, or custom atomics specific to a compiler. `C++17` provides `std::atomic<T>`, however, this can | ||
only provide atomicity for data which is created with atomics in mind. This means allocating temporary data and then | ||
copying it to the output data. `C++20` provides `std::atomic_ref<T>` which would allow us to wrap user-provided output | ||
data in an atomic wrapper, but we cannot assume `C++20` for all users. OpenMP provides atomic operations, but that is | ||
only available for the OpenMP backend. The working plan was to implement a macro like `_ONEDPL_ATOMIC_INCREMENT(var)` | ||
which uses an `std::atomic_ref` if available, and alternatively uses compiler builtins like `InterlockedAdd` or | ||
`__atomic_fetch_add_n`. In a proof of concept implementation, this seemed to work, but does reach more into details than | ||
compiler / OS specifics than is desired for implementations prior to `C++20`. | ||
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After experimenting with a proof of concept implementation of this implementation, it seems that the atomic | ||
implementation has very limited applicability to real cases. We explored a spectrum of number of elements combined with | ||
number of bins with both OpenMP and TBB. There was some subset of cases for which the atomics implementation | ||
outperformed the proposed implementation (below). However, this was generally limited to some specific cases where the | ||
number of bins was very large (~1 Million), and even for this subset significant benefit was only found for cases with a | ||
small number for input elements relative to number of bins. This makes sense because the atomic implementation is able | ||
to avoid the overhead of allocating and initializing temporary histogram copies, which is largest when the number of | ||
bins is large compared to the number of input elements. With many bins, contention on atomics is also limited as | ||
compared to the embarrassingly parallel proposal which does experience this contention. | ||
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When we examine the real world utility of these cases, we find that they are uncommon and unlikely to be the important | ||
use cases. Histograms generally are used to categorize large images or arrays into a smaller number of bins to | ||
characterize the result. Cases for which there are similar or more bins than input elements are not very practical in | ||
practice. The maintenance and complexity cost associated with supporting and maintaining a second implementation to | ||
serve this subset of cases does not seem to be justified. Therefore, this implementation has been discarded at this | ||
time. | ||
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### Other Unexplored Approaches | ||
* One could consider some sort of locking approach which locks mutexes for subsections of the output histogram prior to | ||
modifying them. It's possible such an approach could provide a similar approach to atomics, but with different | ||
overhead trade-offs. It seems quite likely that this would result in more overhead, but it could be worth exploring. | ||
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* Another possible approach could be to do something like the proposed implementation one, but with some sparse | ||
representation of output data. However, I think the general assumptions we can make about the normal case make this | ||
less likely to be beneficial. It is quite likely that `n` is much larger than the output histograms, and that a large | ||
percentage of the output histogram may be occupied, even when considering dividing the input amongst multiple threads. | ||
This could be explored if we find temporary storage is too large for some cases and the atomic approach does not | ||
provide a good fallback. | ||
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## Proposal | ||
After exploring the above implementation for `histogram`, the following proposal better represents the use cases which | ||
are important, and provides reasonable performance for most cases. | ||
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### Embarrassingly Parallel Via Temporary Histograms | ||
This method uses temporary storage and a pair of calls to backend specific `parallel_for` functions to accomplish the | ||
`histogram`. These calls will use the existing infrastructure to provide properly composable parallelism, without extra | ||
histogram-specific patterns in the implementation of a backend. | ||
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This algorithm does however require that each parallel backend will add a | ||
`__enumerable_thread_local_storage<_StoredType>` struct which provides the following: | ||
* constructor which takes a variadic list of args to pass to the constructor of each thread's object | ||
* `get_for_current_thread()` returns reference to the current thread's stored object | ||
* `get_with_id(int i)` returns reference to the stored object for an index | ||
* `size()` returns number of stored objects | ||
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In the TBB backend, this will use `enumerable_thread_specific` internally. For OpenMP, we implement our own similar | ||
thread local storage which will allocate and initialize the thread local storage at the first usage for each active | ||
thread, similar to TBB. The serial backend will merely create a single copy of the temporary object for use. The serial | ||
backend does not technically need any thread specific storage, but to avoid special casing for this serial backend, we | ||
use a single copy of histogram. In practice, our benchmarking reports little difference in performance between this | ||
implementation and the original, which directly accumulated to the output histogram. | ||
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With this new structure we will use the following algorithm: | ||
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1) Run a `parallel_for` pattern which performs a `histogram` on the input sequence where each thread accumulates into | ||
its own temporary histogram returned by `__enumerable_thread_local_storage`. The parallelism is divided on the input | ||
element axis, and we rely upon existing `parallel_for` to implement chunksize and thread composability. | ||
2) Run a second `parallel_for` over the `histogram` output sequence which accumulates all temporary copies of the | ||
histogram created within `__enumerable_thread_local_storage` into the output histogram sequence. The parallelism is | ||
divided on the histogram bin axis, and each chunk loops through all temporary histograms to accumulate into the | ||
output histogram. | ||
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With the overhead associated with this algorithm, the implementation of each `parallel_for` may fallback to a serial | ||
implementation. It makes sense to include this as part of a future improvement of `parallel_for`, where a user could | ||
provide extra information in the call to influence details of the backend implementation from the non-background | ||
specific implementation code. Details which may be included could include grain size or a functor to determine fallback | ||
to serial implementation. | ||
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### Temporary Memory Requirements | ||
Both algorithms should have temporary memory complexity of `O(num_bins)`, and specifically will allocate `num_bins` | ||
output histogram typed elements for each thread used. Depending on the number of input elements, all available threads | ||
may not be used. | ||
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### Computational Complexity | ||
#### Even Bin API | ||
The proposed algorithm should have `O(N) + O(num_bins)` operations where `N` is the number of input elements, and | ||
`num_bins` is the number of histogram bins. | ||
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#### Custom Range Bin API | ||
The proposed algorithm should have `O(N * log(num_bins)) + O(num_bins)` operations where `N` is the number of input | ||
elements, and `num_bins` is the number of histogram bins. |